IDEELResearch/vcfR2manip
Basic functions for manipulating VCFs within the VCFR object/R environment

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vcffilter_info: vcfR2vcffilter_INFO

vcffilter_info: vcfR2vcffilter_INFO
In IDEELResearch/vcfR2manip: Basic functions for manipulating VCFs within the VCFR object/R environment

Description Usage Arguments

View source: R/INFO_Format_filt.R

Description

vcfR2vcffilter_INFO

Usage

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vcffilter_info(
  vcfRobject = NULL,
  infoMQ = NULL,
  infoQD = NULL,
  infoSOR = NULL,
  infoAF = NULL,
  infoDP = NULL,
  infoFS = NULL,
  infoMQRankSum = NULL,
  infoReadPosRankSum = NULL,
  biallelic = TRUE,
  SNPs = TRUE
)

Arguments

infoDP

options is based on a percentile cutoff. As a result, if you specify 0.1, the top and bottom 10th read depth percentiles will be excluded


IDEELResearch/vcfR2manip documentation built on Nov. 16, 2020, 3:51 a.m.

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