genautocorr: genautocorr setup
In IDEELResearch/vcfRmanip: Basic functions for manipulating VCFs within the VCFR object/R environment
Description
Usage
Arguments
Details
Author(s)
Description
Calculates genetic autocorrelation for later linkage disequilibrium filtering.
Usage
1
genautocorr(vcffile = NULL, vcfR = NULL, biallelicsnps = TRUE)
Arguments
vcffile
A variant call file (vcf) path. This VCF will be converted to an object of class vcfR.
Details
From an object of class vcfR, calculate the genetic autocorrelation as the estimate of linkage disequilibrium by genetic distance.
Author(s)
Bob Verity & Nick Brazeau
IDEELResearch/vcfRmanip documentation built on Nov. 17, 2020, 9:32 p.m.
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Description Usage Arguments Details Author(s)
Description
Calculates genetic autocorrelation for later linkage disequilibrium filtering.
Usage
1 | genautocorr(vcffile = NULL, vcfR = NULL, biallelicsnps = TRUE)
|
Arguments
vcffile |
A variant call file (vcf) path. This VCF will be converted to an object of class |
Details
From an object of class vcfR, calculate the genetic autocorrelation as the estimate of linkage disequilibrium by genetic distance.
Author(s)
Bob Verity & Nick Brazeau
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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