Files in IDEELResearch/vcfRmanip
Basic functions for manipulating VCFs within the VCFR object/R environment
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/INFO_Format_filt.R
R/LD_filt.R
R/annot_vcf_from_gff.R
R/dab_genet_dist.R
R/loci_imputation_approaches.R
R/misc_filt.R
R/rehh.R
R/sample_loci_selection.R
R/vcf_viz.R
README.md
codecov.yml
man/EB_for_wsaf.Rd
man/GFF2VariantAnnotation_Short.Rd
man/NRAFdf2Fw_pairwisegendist.Rd
man/binomial_draw_gtmat012_imputation.Rd
man/bivcfR2segsites_wsaf.Rd
man/calc_loci_missingness_by_smpl.Rd
man/corMat.Rd
man/genautocorr.Rd
man/gtmat012.Rd
man/plot_vcfRobj_GT.Rd
man/select_samples.Rd
man/vcfR2Fw_pairwisegendist.Rd
man/vcfR2LDfiltered.Rd
man/vcfR2SubsetChrom.Rd
man/vcfR2SubsetChromPos.Rd
man/vcfR2nohetsmonoclonal_gt.Rd
man/vcfR2removepoorcovloci_dp.Rd
man/vcfR2removesingletons_gt.Rd
man/vcfR2segsites_gt.Rd
man/vcfR2thap.Rd
man/vcf_loci_splitter.Rd
man/vcffilter_ChromPos.Rd
man/vcffilter_format.Rd
man/vcffilter_info.Rd
man/wicalc.Rd
sandbox/devo.R
vcfRmanip.Rproj
