track_circos_depth: Circos depth track

In INRA-LPGP/PoolSex-vis: Visualization of results from PSASS

Description

Draws a track on a circos plot for depth data. This function is intended for use in the draw_circos_plot function.

Usage

track_circos_depth(
  data,
  sex,
  type = "absolute",
  bg.col = "white",
  point.size = 0.01,
  top.track = FALSE,
  sector.names = NULL,
  sector.titles.expand = 1.3,
  sectors = NULL,
  males.color = "dodgerblue3",
  females.color = "firebrick2"
)

Arguments

data	depth data frame.
sex	Sex to draw the track for, either "Females" or "Males".
type	Type of depth to draw the track for, either "absolute" or "relative" (default "absolute").
bg.col	Background color for sectors, either a single color or a vector of colors for each sector (default "white").
point.size	Size of a point in the plot (default 0.01).
top.track	If TRUE, this track will be considered top track of the plot and the x axis will be drawn (default FALSE).
sector.names	Vector of contig names obtained with the load_contig_names (default NULL).
sectors	Vector with the names of the sectors in the plot (default NULL).
males.color	Color for male depth (default "dodgerblue3").
females.color	Color for female depth (default "firebrick2").
sector.title.expand	Value controlling the distance between sector titles and the top axis (default 1.3).

INRA-LPGP/PoolSex-vis documentation built on March 7, 2020, 6:03 p.m.