track_scaffold_position_fst: Scaffold FST position track

In INRA-LPGP/PoolSex-vis: Visualization of results from PSASS

Description

Draws a track on a scaffold plot for FST position data. This function is intended for use in the draw_scaffold_plot function.

Usage

track_scaffold_position_fst(
  data,
  scaffold.name,
  region,
  major.lines.y = TRUE,
  major.lines.x = FALSE,
  ylim = c(min(data$Fst), 1),
  point.size = 0.5,
  bottom.track = FALSE
)

Arguments

data	FST position data frame.
scaffold.name	Name of the plotted scaffold (for the x axis)
region	A vector specifying the boundaries of the region to be plotted, e.g. c(125000, 250000).
major.lines.y	If TRUE, major grid lines will be plotted for the y axis (default: TRUE).
major.lines.x	If TRUE, major grid lines will be plotted for the y axis (default: TRUE).
ylim	Limits of the y axis (default: c(min(FST), 1)).
point.size	Size of a point in the plot (default: 0.5).
bottom.track	If TRUE, this track will be considered bottom track of the plot and the x axis will be drawn (default: FALSE).

INRA-LPGP/PoolSex-vis documentation built on March 7, 2020, 6:03 p.m.