track_circos_window_fst: Circos FST window track

In INRA-LPGP/PoolSex-vis: Visualization of results from PSASS

Description

Draws a track on a circos plot for FST window data. This function is intended for use in the draw_circos_plot function.

Usage

track_circos_window_fst(
  data,
  ylim = c(0, 1.025 * max(data$Fst) + 0.01),
  bg.col = "white",
  point.size = 0.01,
  top.track = FALSE,
  sector.names = NULL,
  sector.titles.expand = 1.3,
  sectors = NULL,
  color.palette = c(`0` = "dodgerblue3", `1` = "goldenrod1", `2` = "grey20")
)

Arguments

data	FST window data frame.
ylim	Limits of the y axis (default c(0, 1.025 * max(FST))).
bg.col	Background color for sectors, either a single color or a vector of colors for each sector (default "white").
point.size	Size of a point in the plot (default 0.01).
top.track	If TRUE, this track will be considered top track of the plot and the x axis will be drawn (default FALSE).
sector.names	Vector of contig names obtained with the load_contig_names (default NULL).
sectors	Vector with the names of the sectors in the plot (default NULL).
color.palette	Color palette for this track (default c("0"="dodgerblue3", "1"="goldenrod1", "2"="grey20")).
sector.title.expand	Value controlling the distance between sector titles and the top axis (default 1.3).

INRA-LPGP/PoolSex-vis documentation built on March 7, 2020, 6:03 p.m.