track_circos_window_snp_combined: Circos SNP window track

In INRA-LPGP/PoolSex-vis: Visualization of results from PSASS

Description

Draws a track on a circos plot for SNP window data. This function is intended for use in the draw_circos_plot function.

Usage

track_circos_window_snp_combined(
  data,
  ylim = c(0, 1.025 * max(data$Males, data$Females) + 0.01),
  bg.col = "white",
  point.size = 0.01,
  top.track = FALSE,
  sector.names = NULL,
  sector.titles.expand = 1.3,
  sectors = NULL,
  males.color = "dodgerblue3",
  females.color = "firebrick2"
)

Arguments

data	SNP window data frame.
ylim	Limits of the y axis (default c(0, 1.025 * max(data$Males, data$Females))).
bg.col	Background color for sectors, either a single color or a vector of colors for each sector (default "white").
point.size	Size of a point in the plot (default 0.01).
top.track	If TRUE, this track will be considered top track of the plot and the x axis will be drawn (default FALSE).
sector.names	Vector of contig names obtained with the load_contig_names (default NULL).
males.color	Color for male-specific SNPs (default "dodgerblue3").
females.color	Color for female-specific SNPs (default "firebrick2").
sex	Sex to draw the track for, either "Females" or "Males".
sector.title.expand	Value controlling the distance between sector titles and the top axis (default 1.3).

INRA-LPGP/PoolSex-vis documentation built on March 7, 2020, 6:03 p.m.