Man pages for INRAE-LPGP/prostPostprocess
Provide utility fonction to postprocess prost! output
| boxplot_mir | Boxplot of individual miRNA count compared by the first... |
| boxplot_one_mir | Boxplot of individual miRNA count compared by the first... |
| compute_all_resampling_combinaisons | Compute all the resampling combinaisons to subset biosamples |
| compute_resampling | Run the analysis function for n_resample random subset of... |
| cpm_distribution_histogram | Histogram of the count distribution |
| dds_from_compressed_by_annotation | Convert the reads tibble into a DESeq dataset |
| gg_color | Vector of ggplot colors |
| load_metadata | Load metadata from a sample info csv file |
| load_prost_compressed_by_annotation | Load data from the prost compressed_by_annotation output file |
| load_prost_compressed_by_genomic_location_miRNA_only | Load data from the prost compressed_by_location output file |
| mir_in_any_condition | List the miRNAs counted in at least one condition |
| mir_in_every_condition | List the miRNAs counted in every condition |
| mir_locations | Get location information for specific mirs |
| pca_plot | PCA plot of the samples |
| pipe | Pipe operator |
| plot_mir_origin_from_juanchich_data | Plot level of expression in every organ of omy miRNA |
| raw_read_count_per_sample | Sum the total read counts for each sample |
| read_count_per_condition | Sum the read counts for every sample by condition |
| resampling_barplot | Barplot describing resampling analysis, for each miR found... |
| resampling_heatmap | Heatmap describing resampling analysis |
| sample_to_mir_heatmap | Heatmap sample to miRMA |
| sample_to_sample_heatmap | Heatmap sample to sample |
| select_mir_compressed_by_annotation | Subset the compressed_by_annotation tibble to keep only mir... |
| select_samples | Select samples to keep only samples with a minimum number of... |
| subset_samples_compressed_by_annotation | Subset the compressed_by_annotation tibble with a sample list |
| subset_samples_sample_info | Subset the sample_info tibble with a sample list |
