compute_resampling: Run the analysis function for n_resample random subset of...

In INRAE-LPGP/prostPostprocess: Provide utility fonction to postprocess prost! output

Run the analysis function for n_resample random subset of biosamples

Description

Run the analysis function for n_resample random subset of biosamples

Usage

compute_resampling(
  reads,
  sample_info,
  condition_list,
  ds_formula,
  analysis_function,
  control_combinaisons,
  treatment_combinaisons,
  n_resample = 50
)

Arguments

reads	reads tibble
sample_info	sample info tibble with a conditions column
condition_list	a string vector describing the different conditions
ds_formula	a formula describing the design of the analysis
analysis_function	custom analysis function using the reads, sample_info, condition_list and ds_formula
control_combinaisons	a tibble with control biosample subsets to analyse (a line is a subset, a column is a biosample, column names doesnt matter)
treatment_combinaisons	a tibble with treatment biosample subsets to analyse (a line is a subset, a column is a biosample, column names doesnt matter)
n_resample	the number of resampling to analyse

INRAE-LPGP/prostPostprocess documentation built on April 14, 2023, 12:59 p.m.