dds_from_compressed_by_annotation: Convert the reads tibble into a DESeq dataset

In INRAE-LPGP/prostPostprocess: Provide utility fonction to postprocess prost! output

Convert the reads tibble into a DESeq dataset

Description

Convert the reads tibble into a DESeq dataset

Usage

dds_from_compressed_by_annotation(
  reads,
  sample_info,
  condition_list = "conditions",
  ds_formula = ~conditions
)

Arguments

reads	reads tibble
sample_info	sample info tibble with a conditions column
condition_list	a string vector describing the different conditions
ds_formula	a formula describing the design of the analysis

Value

DESeq dataset

INRAE-LPGP/prostPostprocess documentation built on April 14, 2023, 12:59 p.m.