sample_to_mir_heatmap: Heatmap sample to miRMA

In INRAE-LPGP/prostPostprocess: Provide utility fonction to postprocess prost! output

Heatmap sample to miRMA

Description

Warning : requires metadata to have "condition" and "project_name" entries

Usage

sample_to_mir_heatmap(
  dds,
  deseq_transformation,
  cluster_cols = T,
  condition_list = "conditions",
  scale = "row",
  title = "Project"
)

Arguments

dds	Normalized DESeq dataset
deseq_transformation	DESeq transformation (e.g. normTransform(dds))
cluster_cols	boolean values determining if columns should be clustered or hclust object
condition_list	a string vector describing the different conditions
scale	character indicating if the values should be centered and scaled in either the row direction or the column direction, or none. Corresponding values are "row", "column" and "none"
title	title to add to the plot, default : "Project"

Value

pheatmap heatmap

INRAE-LPGP/prostPostprocess documentation built on April 14, 2023, 12:59 p.m.