write.hdf5: write.hdf5
In ImmuneDynamics/Spectre: High-dimensional cytometry and imaging analysis.

write.hdf5

R Documentation

write.hdf5

Description

write.hdf5

Usage

write.hdf5(
  dat,
  channels = NULL,
  merge.channels = NULL,
  q.max = 0.99,
  flip.y = TRUE,
  random.crop.x = NULL,
  random.crop.y = NULL,
  random.crop.x.seed = 42,
  random.crop.y.seed = 21,
  crop.coordinates = NULL,
  print.spatial.plot = TRUE,
  chunk.size = NULL,
  compression = 0,
  plots = FALSE
)

Arguments

`dat`	NO DEFAULT. Spatial data list
`channels`	DEFAULT = NULL. Channels to include. If NULL, all channels included.
`merge.channels`	DEFAULT = NULL. Channels to use to create an additional 'merged' channel.
`q.max`	DEFAULT = 0.99
`flip.y`	DEFAULT = TRUE
`random.crop.x`	DEFAULT = NULL
`random.crop.y`	DEFAULT = NULL
`random.crop.x.seed`	DEFAULT = 42
`random.crop.y.seed`	DEFAULT = 21
`print.spatial.plot`	DEFAULT = TRUE
`chunk.size`	DEFAULT = NULL
`compression`	DEFAULT = 0
`plots`	DEFAULT = FALSE