zoopComb: Combined zooplankton dataset

In InteragencyEcologicalProgram/zooper: Download and Integrate Zooplankton Datasets from the Upper San Francisco Estuary

Combined zooplankton dataset

Description

All source zooplankton datasets combined into one tibble.

Usage

zoopComb

Format

a tibble with 3,615,105 rows and 14 columns.

Source

Abbreviated name of the source dataset. "EMP"=Environmental Monitoring Program, "FRP"=Fish Restoration Program, "FMWT"= Fall Midwater Trawl, "STN"= Townet Survey, "20mm" =20mm survey, "DOP" = Directed Outflow Project Lower Trophic Study, and "YBFMP"= Yolo Bypass Fish Monitoring Program.

SizeClass

Net size class. Micro corresponds to 43-50 \mum mesh, Meso corresponds to 150-160 \mum mesh, and Macro corresponds to 500-505 \mum mesh. However, prior to 1974 EMP macrozooplankton were sampled with a 930 \mum mesh net.

Volume

Volume (m³) of water sampled

Lifestage

Zooplankton life stage

Taxname

Scientific name

Phylum

Phylum

Class

Class

Order

Order

Family

Family

Genus

Genus

Species

Species

Taxlifestage

Combined Taxname and Lifestage

SampleID

Unique ID of the zooplankton sample. This key and SizeClass link to the zoopEnvComb dataset

CPUE

Catch per unit effort (number m^-3)

BPUE

Carbon biomass per unit effort (\mug/ m³)

Details

Note that EMP Macro samples with QAQC flags (any value of AmphipodCode other than "A") have had their Amphipod CPUE set to NA in this integrated dataset. For more information on the source datasets see zooper.

See Also

Zoopdownloader, Zoopsynther, zooper

InteragencyEcologicalProgram/zooper documentation built on Feb. 6, 2025, 9:01 a.m.