zoopEnvComb: Environmental data

In InteragencyEcologicalProgram/zooper: Download and Integrate Zooplankton Datasets from the Upper San Francisco Estuary

Environmental data

Description

Accessory environmental data from the combined zooplankton dataset. Not all datasets report all environmental parameters.

Usage

zoopEnvComb

Format

a tibble with 44,690 rows and 20 columns

Source

Abbreviated name of the source dataset. "EMP"=Environmental Monitoring Program, "FRP"=Fish Restoration Program, "FMWT"= Fall Midwater Trawl, "STN"= Townet Survey, "20mm" =20mm survey, "DOP" = Directed Outflow Project Lower Trophic Study, and "YBFMP"= Yolo Bypass Fish Monitoring Program.

Year

Year sample was collected

Date

Date sample was collected

Datetime

Date and time sample was collected, if time was provided

TowType

Sample collection method identifying whether each tow was a surface, bottom, oblique, or vertical pump sample

Tide

Tidal stage

Station

Station where sample was collected. This is the key that links to the stations dataset

Chl

Chlorophyll concentration in \mug/L

Secchi

Secchi depth in cm

Temperature

Temperature in °C.

BottomDepth

Total depth of the water column in m

TurbidityNTU

Water turbidity in Nephelometric Turbidity Units

TurbidityFNU

Water turbidity in Formazin Nephelometric Units

Microcystis

Intensity of Microcystis bloom coded qualitatively from 1-5 where 1 = absent, 2 = low, 3 = medium, 4 = high, 5 = very high

pH

Water pH

DO

Dissolved oxygen in mg/L

SalSurf

Surface salinity in PPT

SalBott

Bottom salinity in PPT

Latitude

Latitude in decimal degrees

Longitude

Longitude in decimal degrees

AmphipodCode

Code indicating sample quality for EMP macro amphipod samples (A=valid, B=questionable [veg/algal bloom in net], C=not valid [error in lab], D=suspect [possible missing data])

SampleID

Unique ID of the zooplankton sample. This is the key that links to the zoopComb dataset

See Also

Zoopdownloader, Zoopsynther, zooper

InteragencyEcologicalProgram/zooper documentation built on Feb. 6, 2025, 9:01 a.m.