Files in Irrationone/cellassign
Automated, probabilistic assignment of scRNA-seq to cell types
.Rbuildignore
.gitignore
.travis.yml
CODE_OF_CONDUCT.md
DESCRIPTION
LICENSE.md
NAMESPACE
R/cellassign.R
R/inference-tensorflow.R
R/simulate.R
R/utils.R
README.md
data/example_TME_markers.rda
data/example_cellassign_fit.rda
data/example_marker_mat.rda
data/example_sce.rda
data/holik_data.rda
docs/404.html
docs/LICENSE.html
docs/articles/cellassign_overview.png
docs/articles/constructing-markers-from-purified-data.html
docs/articles/constructing-markers-from-purified-data_files/figure-html/unnamed-chunk-17-1.png
docs/articles/index.html
docs/articles/introduction-to-cellassign.html
docs/articles/introduction-to-cellassign_files/figure-html/unnamed-chunk-16-1.png
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/cellassign.html
docs/reference/cellprobs.html
docs/reference/celltypes.html
docs/reference/dot-onLoad.html
docs/reference/example_TME_markers.html
docs/reference/example_cellassign_fit.html
docs/reference/example_marker_mat.html
docs/reference/example_sce.html
docs/reference/extract_expression_matrix.html
docs/reference/get_mle_cell_type.html
docs/reference/holik_data.html
docs/reference/index.html
docs/reference/inference_tensorflow.html
docs/reference/initialize_X.html
docs/reference/marker_list_to_mat.html
docs/reference/mleparams.html
docs/reference/print.cellassign.html
docs/reference/simulate_cellassign.html
inst/cellassign_schematic.png
man/cellassign.Rd
man/cellprobs.Rd
man/celltypes.Rd
man/dot-onLoad.Rd
man/example_TME_markers.Rd
man/example_cellassign_fit.Rd
man/example_marker_mat.Rd
man/example_sce.Rd
man/extract_expression_matrix.Rd
man/get_mle_cell_type.Rd
man/holik_data.Rd
man/inference_tensorflow.Rd
man/initialize_X.Rd
man/marker_list_to_mat.Rd
man/mleparams.Rd
man/print.cellassign.Rd
man/simulate_cellassign.Rd
tests/testthat.R
tests/testthat/test_cellassign.R
vignettes/cellassign_overview.png
vignettes/constructing-markers-from-purified-data.Rmd
vignettes/introduction-to-cellassign.Rmd
