inference_tensorflow: cellassign inference in tensorflow, semi-supervised version

In Irrationone/cellassign: Automated, probabilistic assignment of scRNA-seq to cell types

Description

cellassign inference in tensorflow, semi-supervised version

Usage

inference_tensorflow(
  Y,
  rho,
  s,
  X,
  G,
  C,
  N,
  P,
  B = 10,
  shrinkage,
  verbose = FALSE,
  n_batches = 1,
  rel_tol_adam = 1e-04,
  rel_tol_em = 1e-04,
  max_iter_adam = 1e+05,
  max_iter_em = 20,
  learning_rate = 1e-04,
  random_seed = NULL,
  min_delta = 2,
  dirichlet_concentration = rep(0.01, C),
  threads = 0
)

Value

A list of MLE cell type calls, MLE parameter estimates, and log likelihoods during optimization.

Irrationone/cellassign documentation built on April 23, 2020, 3:10 p.m.