celltypes: Get the cell type assignments of a 'cellassign' fit

In Irrationone/cellassign: Automated, probabilistic assignment of scRNA-seq to cell types

Description

Get the MLE cell type estimates for each cell

Usage

celltypes(x, assign_prob = 0.95)

## S3 method for class 'cellassign'
celltypes(x, assign_prob = 0.95)

Arguments

x	An object of class cellassign returned by a call to cellassign(...)
assign_prob	The probability threshold above which a cell is assigned to a given cell type, otherwise "unassigned"

Value

A character vector with the MLE cell type for each cell, if the probability is greater than assign_prob.

Examples

data(example_cellassign_fit)
celltypes(example_cellassign_fit)

Irrationone/cellassign documentation built on April 23, 2020, 3:10 p.m.