Files in Irrationone/cellassign

Automated, probabilistic assignment of scRNA-seq to cell types

.Rbuildignore

.gitignore

.travis.yml

CODE_OF_CONDUCT.md

DESCRIPTION

LICENSE.md

NAMESPACE

R/cellassign.R R/inference-tensorflow.R R/simulate.R R/utils.R README.md

data/example_TME_markers.rda

data/example_cellassign_fit.rda

data/example_marker_mat.rda

data/example_sce.rda

data/holik_data.rda

docs/404.html

docs/LICENSE.html

docs/articles/cellassign_overview.png

docs/articles/constructing-markers-from-purified-data.html

docs/articles/constructing-markers-from-purified-data_files/figure-html/unnamed-chunk-17-1.png

docs/articles/index.html

docs/articles/introduction-to-cellassign.html

docs/articles/introduction-to-cellassign_files/figure-html/unnamed-chunk-16-1.png

docs/authors.html

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/cellassign.html

docs/reference/cellprobs.html

docs/reference/celltypes.html

docs/reference/dot-onLoad.html

docs/reference/example_TME_markers.html

docs/reference/example_cellassign_fit.html

docs/reference/example_marker_mat.html

docs/reference/example_sce.html

docs/reference/extract_expression_matrix.html

docs/reference/get_mle_cell_type.html

docs/reference/holik_data.html

docs/reference/index.html

docs/reference/inference_tensorflow.html

docs/reference/initialize_X.html

docs/reference/marker_list_to_mat.html

docs/reference/mleparams.html

docs/reference/print.cellassign.html

docs/reference/simulate_cellassign.html

inst/cellassign_schematic.png

man/cellassign.Rd man/cellprobs.Rd man/celltypes.Rd man/dot-onLoad.Rd man/example_TME_markers.Rd man/example_cellassign_fit.Rd man/example_marker_mat.Rd man/example_sce.Rd man/extract_expression_matrix.Rd man/get_mle_cell_type.Rd man/holik_data.Rd man/inference_tensorflow.Rd man/initialize_X.Rd man/marker_list_to_mat.Rd man/mleparams.Rd man/print.cellassign.Rd man/simulate_cellassign.Rd tests/testthat.R tests/testthat/test_cellassign.R

vignettes/cellassign_overview.png

vignettes/constructing-markers-from-purified-data.Rmd vignettes/introduction-to-cellassign.Rmd

Irrationone/cellassign documentation built on April 23, 2020, 3:10 p.m.