Man pages for Irrationone/cellassign
Automated, probabilistic assignment of scRNA-seq to cell types
| cellassign | Annotate cells to cell types using cellassign |
| cellprobs | Get the cell assignment probabilities of a 'cellassign' fit |
| celltypes | Get the cell type assignments of a 'cellassign' fit |
| dot-onLoad | Check for tensorflow |
| example_cellassign_fit | Example cellassign fit |
| example_marker_mat | Example cell marker matrix |
| example_sce | Example SingleCellExperiment |
| example_TME_markers | Example tumour microevironment markers |
| extract_expression_matrix | Extract expression matrix from expression object |
| get_mle_cell_type | Get MLE estimates of type of each cell |
| holik_data | Example bulk RNA-seq data |
| inference_tensorflow | cellassign inference in tensorflow, semi-supervised version |
| initialize_X | Create X matrix |
| marker_list_to_mat | Convert a list of marker genes to a binary matrix |
| mleparams | Get the MLE parameter list of a 'cellassign' fit |
| print.cellassign | Print a 'cellassign' fit |
| simulate_cellassign | Simulate from the cellassign model |
