escoEstLib: Estimate esco library size parameters

Description Usage Arguments Value

View source: R/esco-estimate.R

Description

The Shapiro-Wilks test is used to determine if the library sizes are normally distributed. If so a normal distribution is fitted to the library sizes, if not (most cases) a log-normal distribution is fitted and the estimated parameters are added to the params object. See fitdist for details on the fitting.

Usage

1
escoEstLib(counts, norm.counts, params)

Arguments

counts

counts matrix to estimate parameters from.

norm.counts

library size normalised counts matrix.

params

escoParams object to store estimated values in.

Value

escoParams object with estimated values.


JINJINT/ESCO documentation built on May 13, 2021, 7:25 p.m.