escoSimGroupCellMeans: Simulate group cell means
In JINJINT/ESCO: Simple Simulation of Single-cell RNA Sequencing Data
Description
Usage
Arguments
Value
View source: R/esco-simulate.R
Description
Simulate a gene by cell matrix giving the mean expression for each gene in
each cell where cells are of discrete group structure.
For a cell we start with the base gene mean and then combined with the DE factor
for the group/branch they belong to
(when simulating group/tree) if the gene is DE gene, finally the
means are adjusted for each cell's expected library size.
Usage
1
escoSimGroupCellMeans(sim, verbose)
Arguments
sim
SingleCellExperiment to add cell means to.
verbose
whether to print the process or not.
Value
SingleCellExperiment with added cell means.
JINJINT/ESCO documentation built on May 13, 2021, 7:25 p.m.
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Description Usage Arguments Value
View source: R/esco-simulate.R
Description
Simulate a gene by cell matrix giving the mean expression for each gene in each cell where cells are of discrete group structure. For a cell we start with the base gene mean and then combined with the DE factor for the group/branch they belong to (when simulating group/tree) if the gene is DE gene, finally the means are adjusted for each cell's expected library size.
Usage
1 | escoSimGroupCellMeans(sim, verbose)
|
Arguments
sim |
SingleCellExperiment to add cell means to. |
verbose |
whether to print the process or not. |
Value
SingleCellExperiment with added cell means.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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