Man pages for JPNotts/Package
Simulate Spike Sequences
| birth | RJMCMC: Birth of a change point. |
| change_height | RJMCMC: Change height. |
| check_feasible | Check a step function is feasible. |
| colMax | Maximum of a column |
| conditioned_poisson | Poisson conditioned on max value. |
| conf_interval_pwc | get the mean and 95% conf interval for PWC method |
| covariance | Calculate the covarience of two given points. |
| cov.fn | Square Exponential covariance function |
| csv_to_spike | Get spikes from .csv file of raw data. |
| cumsimpson | Simpson's rule |
| data_to_spike | Get spikes from raw data |
| death | RJMCMC: Death of a change point |
| delta | Function for Dirac Delta function. |
| exper.quantiles | A function to get the quantiles given spikes and intensity... |
| get_all_spikes_app | Retrieve spikes from store and data. |
| get_l | get L from a filepath |
| get_l_single | Approximate l from PWC |
| get_QQ_KS | Get QQ and KS details |
| get_QQ_KS_singleISI | Return QQ and KS for single ISI.type and model type |
| GetSigma | Function that returns the covariance matrix Sigma. |
| get_slopes | A function that returns the slopes of the individual spike... |
| get_spikes | get_spikes() |
| get_spikes_app | Get spikes for the shiny app. |
| get.tau | A function that returns the ISI times under the... |
| get_X | get_X() |
| inc.fineness | A function to increase the fineness of the intensity... |
| ISI_to_spike | Convert ISI times to spike times |
| log_pi_hyper_param | Marginal of the ISI parameter |
| log_pi_l | Title |
| log_pi_Tmin | Likelihood of the refractory period |
| log_pi_x | Likelihood of the intensity function. |
| mcmc_constant | MCMC algorithm when the intensity function is constant. |
| mcmc_gp | Title za |
| mcmc_pwc | RJMCMC: MCMC. |
| model.quantiles | A function that gets the qunatiles for the possion process of... |
| move_change_point | RJMCMC: Move change point. |
| Calculate the probability density. | |
| PDF_tmin | Calculate the probability density. |
| plot.95conf | Getmean + 95% conf of intensity function |
| plot_everything | Plot the important plots |
| QQ_KS_data | Get the QQ and KS quantiles |
| q.t | A function to calclate q(t), the conditional intensity... |
| raw_spike_seq | Convert time series to spikes |
| remove_transients | Remove transient periods |
| remove_trend | Remove Linear trends |
| R.t | A function that returns R(t), the integrated intensity... |
| run_app | Application for Simulating Spikes |
| show_spikes | Show spikes relative to raw data. |
| simulate_spikes | Simulate spike sequences |
| spike_merge | Merge spikes |
| Spikes | Simulate a single spike sequence |
| spike_to_ISI | Convert spike times to ISI times |
| stat_gp | Simulate a Gaussian Process using Spectral decomposition |
