Man pages for JSHuisman/conjugator
Estimate Plasmid Conjugation Rates
| conjugator | conjugator: A package to compute conjugation rate estimates |
| dot-check_cols_present | Check if necessary columns are present |
| dot-check_conj_input | Check conjugation rate estimation input |
| dot-check_crit_time_input | Checks input to estimate critical times |
| dot-check_growth_input | Check growth input data '.check_growth_input' performs... |
| dot-estimate_ASM | Estimate ASM conjugation rates |
| dot-estimate_conj_per_method | Subroutine to compute individual conjugation rate estimates |
| dot-estimate_Dionisio | Dionisio estimate from data |
| dot-estimate_Gama | Gama estimate from data |
| dot-estimate_SM | Simonsen conjugation rate estimate |
| dot-estimate_tcrit1 | Estimate tcrit1 |
| dot-estimate_tcrit2 | Estimate tcrit2 |
| dot-estimate_tcrit3 | Estimate tcrit3 |
| dot-estimate_TD | Estimate T/D from data |
| dot-estimate_T_DR | Estimate T/DR from data |
| dot-estimate_T_RT | Estimate the transconjugant fraction |
| dot-get_crit_time_input | Shape data to estimate critical times |
| dot-logist | Logistic growth function |
| DRT_example | Example conjugation rates (DRT) |
| estimate_conj_rate | Estimate plasmid conjugation rates |
| estimate_crit_time | Estimate critical times |
| estimate_growth_rate | Fit input data to a logistic growth function |
| get_growth_fit_for_plot | Growth fit for plotting 'get_growth_fit_for_plot' computes a... |
| growth_example | Example OD measurements |
| scan_crit_time | Scan critical times |
| TRT_example | Example conjugation rates (TRT) |
