dot-get_crit_time_input: Shape data to estimate critical times

In JSHuisman/conjugator: Estimate Plasmid Conjugation Rates

Description

.get_crit_time_input returns the dataframe needed to estimate the critical times corresponding to a conjugation experiment.

Usage

.get_crit_time_input(DRT, TRT, id_cols = c("ID"), verbose = T)

Arguments

DRT	Dataframe. Data corresponding to the first conjugation experiment. Necessary columns: D.0, R.0 are initial pop sizes; psi.D, psi.R, psi.T are growth rates. If gamma.D is not among the columns, the function will attempt to estimate gamma.D from the data given. This requires D.t, R.t, T.t (final population sizes) and t (the time of measurement). If gamma.T is among the columns, the input under TRT will be ignored.
TRT	Dataframe. Data corresponding to the second conjugation experiment. Same columns needed as for DRT.
id_cols	List of strings. Specifies the column names that should be treated as identifiers (will be returned in output).
verbose	Boolean. Should warnings be returned?

Details

Note: the number of columns in the output can vary, depending on whether gamma.T can be estimated or not.

JSHuisman/conjugator documentation built on Dec. 18, 2021, 12:27 a.m.