dot-estimate_Dionisio: Dionisio estimate from data

In JSHuisman/conjugator: Estimate Plasmid Conjugation Rates

Description

.estimate_Dionisio returns the Dionisio estimate: T/sqrt(DR).

Usage

.estimate_Dionisio(data)

Arguments

data

Dataframe. Required columns vary depending on the method used to estimate the conjugation rates. The following columns are typically required: D.t, R.t, T.t are final population sizes; D.0, R.0 are initial pop sizes; psi.D, psi.R, psi.T are growth rates; t is the time of measurement (assumes start at 0). Optional columns: T.0, psi.max (for the Simonsen method).

Details

Dionisio F, Matic I, Radman M, Rodrigues OR, Taddei F. Plasmids spread very fast in heterogeneous bacterial communities. Genetics 2002 Dec;162(4):1525–32.

Value

estimate vector

JSHuisman/conjugator documentation built on Dec. 18, 2021, 12:27 a.m.