dot-estimate_Gama: Gama estimate from data

In JSHuisman/conjugator: Estimate Plasmid Conjugation Rates

Description

.estimate_Gama returns the Gama estimate: log10(T/sqrt(DR)). This is the log10 of the Dionisio estimate.

Usage

.estimate_Gama(data)

Arguments

data

Dataframe. Required columns vary depending on the method used to estimate the conjugation rates. The following columns are typically required: D.t, R.t, T.t are final population sizes; D.0, R.0 are initial pop sizes; psi.D, psi.R, psi.T are growth rates; t is the time of measurement (assumes start at 0). Optional columns: T.0, psi.max (for the Simonsen method).

Details

João Alves Gama, Rita Zilhão, and Francisco Dionisio. Multiple plasmid interference - Pledging allegiance to my enemy’s enemy. Plasmid, 93(August):17–23, 2017.

Value

estimate vector

JSHuisman/conjugator documentation built on Dec. 18, 2021, 12:27 a.m.