AIcheck: Error Check the Adult Index Data

In JVAdams/GLFC: Great Lakes Fishery Commission

Error Check the Adult Index Data

Description

Check the adult sea lamprey trapping data (collected for estimation of the Adult Index) for errors.

Usage

AIcheck(streamDat, csvDir, outFile = NULL, otherTabs = NULL)

Arguments

streamDat	A data frame of old and new stream mark-recapture estimates used to estimate the lake-wide Adult Indices, typically the output from AIprep. The data frame must include: year, lake, lake-stream ID lscode (see details), population estimate PEmr, coefficient of variation CVmr (100% * sqrt(variance(PEmr)) / PEmr), index, a logical identifying the index streams; maintain a logical identifying the streams that will continue to have ongoing trapping even if not part of the Adult Index; indexContrib a numeric, the stream population estimate that will be used in the Adult Index (NA for new); indexContribCV a numeric, the stream CV that will be used to generate 95% confidence intervals for the Adult Index (NA for new); and complete a logical identifying streams and years for which the Adult Index has already been estimated (FALSE for new).
csvDir	A character scalar identifying the path where the rtf file will be stored, e.g., csvDir = "C:\temp\mydir".
outFile	Name of the output rtf file, default NULL, in which case the file will be named "YYYY Adult Index - error checking.doc" where YYYY is the latest year represented in streamDat.
otherTabs	A list of other tables to be printed in error check report, default NULL. The list names will be used as captions.

Details

Lake-stream IDs are combination of lake ID and stream ID e.g., 1.064 = lake ID + (stream ID)/1000.

Value

An error checking document as an rtf file (with the file type *.doc, so that MS Word will open it automatically).

JVAdams/GLFC documentation built on Jan. 5, 2023, 12:59 a.m.