convert_to_cigar: Convert Expanded CIGAR String to Standard CIGAR Format
In JakobPedersenLab/dreams: Deep Read-level Error Model for Sequencing data
View source: R/sequence_position_handling_indels.R
convert_to_cigar R Documentation
Convert Expanded CIGAR String to Standard CIGAR Format
Description
This function takes an expanded CIGAR string (where each
operation is represented individually, e.g., "MMMMMMMDDDDDDDMIDD") and
converts it into standard CIGAR format (where consecutive operations are
counted, e.g., "7M7D1M1I2D").
Usage
convert_to_cigar(cleaned_cigar)
Arguments
cleaned_cigar
A character string representing the expanded CIGAR
string.
Value
A character string in standard CIGAR format.
JakobPedersenLab/dreams documentation built on Feb. 2, 2024, 3:14 p.m.
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View source: R/sequence_position_handling_indels.R
| convert_to_cigar | R Documentation |
Convert Expanded CIGAR String to Standard CIGAR Format
Description
This function takes an expanded CIGAR string (where each operation is represented individually, e.g., "MMMMMMMDDDDDDDMIDD") and converts it into standard CIGAR format (where consecutive operations are counted, e.g., "7M7D1M1I2D").
Usage
convert_to_cigar(cleaned_cigar)
Arguments
cleaned_cigar |
A character string representing the expanded CIGAR string. |
Value
A character string in standard CIGAR format.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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