get_indels_start_positions: Extract Start Positions of Indels from a CIGAR String
In JakobPedersenLab/dreams: Deep Read-level Error Model for Sequencing data
View source: R/sequence_position_handling_indels.R
get_indels_start_positions R Documentation
Extract Start Positions of Indels from a CIGAR String
Description
This function analyzes a CIGAR string and extracts the start
positions of insertions and deletions. It parses the CIGAR string,
calculates the cumulative lengths of operations, and then identifies the
start positions of the 'I' and 'D' segments.
Usage
get_indels_start_positions(cigar)
Arguments
cigar
A character string representing the CIGAR format.
Value
An integer vector containing the start positions of each insertion
and deletion in the CIGAR string. Positions are 1-based.
JakobPedersenLab/dreams documentation built on Feb. 2, 2024, 3:14 p.m.
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View source: R/sequence_position_handling_indels.R
| get_indels_start_positions | R Documentation |
Extract Start Positions of Indels from a CIGAR String
Description
This function analyzes a CIGAR string and extracts the start positions of insertions and deletions. It parses the CIGAR string, calculates the cumulative lengths of operations, and then identifies the start positions of the 'I' and 'D' segments.
Usage
get_indels_start_positions(cigar)
Arguments
cigar |
A character string representing the CIGAR format. |
Value
An integer vector containing the start positions of each insertion and deletion in the CIGAR string. Positions are 1-based.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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