get_indel_genomic_pos: Extract Genomic Positions of Indels from a CIGAR String
In JakobPedersenLab/dreams: Deep Read-level Error Model for Sequencing data
View source: R/sequence_position_handling_indels.R
get_indel_genomic_pos R Documentation
Extract Genomic Positions of Indels from a CIGAR String
Description
This function uses the get_indel_info function to extract the genomic
positions of indels from a given CIGAR string, starting from a specified
genomic position.
Usage
get_indel_genomic_pos(pos, cigar)
Arguments
pos
Integer, the starting genomic position for the CIGAR string
analysis.
cigar
String, the CIGAR string representing genomic alignments.
Value
An integer vector containing the genomic positions of the indels in
the CIGAR string.
JakobPedersenLab/dreams documentation built on Feb. 2, 2024, 3:14 p.m.
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View source: R/sequence_position_handling_indels.R
| get_indel_genomic_pos | R Documentation |
Extract Genomic Positions of Indels from a CIGAR String
Description
This function uses the get_indel_info function to extract the genomic
positions of indels from a given CIGAR string, starting from a specified
genomic position.
Usage
get_indel_genomic_pos(pos, cigar)
Arguments
pos |
Integer, the starting genomic position for the CIGAR string analysis. |
cigar |
String, the CIGAR string representing genomic alignments. |
Value
An integer vector containing the genomic positions of the indels in the CIGAR string.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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