extract_features_from_bam_indels: Extract Features from BAM Data

In JakobPedersenLab/dreams: Deep Read-level Error Model for Sequencing data

Extract Features from BAM Data

Description

Extract Features from BAM Data

Usage

extract_features_from_bam_indels(
  bam_df,
  reference_path,
  add_umi_features = all(c("cd", "ce") %in% colnames(bam_df))
)

Arguments

bam_df	A DataFrame originating from 'load_BAM' and processed by extract_indel_info' containing alignment data.
reference_path	Path to the reference genome file in FASTA format.
add_umi_features	Check if umi information is available.

Value

A DataFrame with extracted features, including read positions and possibly UMI data.

JakobPedersenLab/dreams documentation built on Feb. 2, 2024, 3:14 p.m.