plot_similarity: Plot similarity resulting from estimated covariance

In James-Thorson/VAST: Vector-Autoregressive Spatio-Temporal (VAST) Model

Plot similarity resulting from estimated covariance

Description

plot_similarity plots metrics of similarity derived from estimated covariance matrices

Usage

plot_similarity(
  fit,
  year_labels = fit$year_labels,
  category_names = fit$category_names,
  similarity_metric = c("hclust", "Correlation", "Dissimilarity", "Covariance")[1],
  working_dir = getwd(),
  file_name = similarity_metric,
  panel_size = 3,
  Res = 200,
  Format = "png"
)

Arguments

fit	output from fit_model
similarity_metric	approach used to visualize similarity among years/categories resulting from estimated loadings matrices. Available options include "hclust", "Correlation", "Dissimilarity", "Covariance"

James-Thorson/VAST documentation built on Feb. 9, 2025, 9:05 a.m.