plotSNPClusters: plot of SNP clusters with weighted edges
In JamesStimson/transcluster: Transmission clustering using SNPs and sample dates
Description
Usage
Arguments
Value
Examples
Description
plot of SNP clusters with weighted edges
Usage
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plotSNPClusters(
myModel,
eWidth = 2,
vSize = 5,
vFontSize = 1,
vColor = "cyan",
level = 1,
thick = 1,
labelOffset = 1
)
Arguments
myModel
cluster analyis model created using createModel()
eWidth
width of edges
vSize
size of vertices
vFontSize
font size of vertex labels
vColor
vertex colour
level
SNP cut-off level
thick
edge weight adjustment factor
labelOffset
offset height for vertex labels
Value
graph object
Examples
1
plotSNPClusters(clus, bcModel, level=4, vColor='orange', vSize=4, thick=1.25)
JamesStimson/transcluster documentation built on May 24, 2020, 10:39 p.m.
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Description Usage Arguments Value Examples
Description
plot of SNP clusters with weighted edges
Usage
1 2 3 4 5 6 7 8 9 10 | plotSNPClusters(
myModel,
eWidth = 2,
vSize = 5,
vFontSize = 1,
vColor = "cyan",
level = 1,
thick = 1,
labelOffset = 1
)
|
Arguments
myModel |
cluster analyis model created using createModel() |
eWidth |
width of edges |
vSize |
size of vertices |
vFontSize |
font size of vertex labels |
vColor |
vertex colour |
level |
SNP cut-off level |
thick |
edge weight adjustment factor |
labelOffset |
offset height for vertex labels |
Value
graph object
Examples
1 | plotSNPClusters(clus, bcModel, level=4, vColor='orange', vSize=4, thick=1.25)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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