plotTransClusters: plot of transmission clusters with weighted edges

In JamesStimson/transcluster: Transmission clustering using SNPs and sample dates

Description

plot of transmission clusters with weighted edges

Usage

plotTransClusters(
  myModel,
  eWidth = 2,
  vSize = 5,
  vFontSize = 1,
  vColor = "cyan",
  level = 1,
  thick = 1,
  labelOffset = 1,
  showLabels = TRUE
)

Arguments

myModel	cluster analyis model created using createModel()
eWidth	width of edges
vSize	size of vertices
vFontSize	font size of vertex labels
vColor	vertex colour
level	transmission cut-off level
thick	edge weight adjustment factor
labelOffset	offset height for vertex label
showLabels	toggle labels

Value

graph object

Examples

bcg <- plotTransClusters(clus, bcModel, level=3, vColor='lightblue',vSize=4, thick = 2, vFontSize=1)

JamesStimson/transcluster documentation built on May 24, 2020, 10:39 p.m.