Files in JamesStimson/transcluster
Transmission clustering using SNPs and sample dates
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/.DS_Store
R/._Spatial.R
R/Interface.R
R/Methods.R
R/Model.R
R/Probability.R
R/Resist.R
R/Spatial.R
R/Visuals.R
README.md
inst/extdata/.gitkeep
inst/extdata/bc_snp_matrix_R.csv
inst/extdata/example_region_data.csv
inst/extdata/mclust12_dates_R.csv
man/.Rapp.history
man/clusterTimedTree.Rd
man/compareClusters.Rd
man/createModel.Rd
man/cutoffLevel.Rd
man/makeSNPClusters.Rd
man/makeTransClusters.Rd
man/makeTransClustersResist.Rd
man/nTransCutoff.Rd
man/plotClusters.Rd
man/plotSNPClusters.Rd
man/plotTransClusters.Rd
man/plotTransClustersSpatial.Rd
man/regionColour.Rd
man/regionWeight.Rd
man/setCutoffs.Rd
man/setCutoffsResist.Rd
man/setCutoffsSpatial.Rd
man/setDatesFromFile.Rd
man/setParams.Rd
man/setRegionColours.Rd
man/setRegionLabels.Rd
man/setRegionWeights.Rd
man/setRegionsFromFile.Rd
man/setSNPFromFile.Rd
man/setSNPResistFromFile.Rd
man/setSNPThresholds.Rd
man/setTransMatrixFromFile.Rd
man/setTransThresholds.Rd
man/withinCluster.Rd
transcluster.Rproj
vignettes/.DS_Store
vignettes/how-to-guide.Rmd
