API for JanEngelstaedter/cophy
Constructing random cophylogenetic trees and analysing their statistics
| Global functions | |
|---|---|
| add_branchSurvival | Source code |
| convert_HBranchesToPhylo | Source code |
| convert_HPCophyloToBranches | Source code |
| convert_HPhyloToBranches | Source code |
| convert_PBranchesToPhylo | Source code |
| cophylogeny | Man page Source code |
| decimal_places | Source code |
| get_GDist | Man page Source code |
| get_PEventsThroughTime | Man page Source code |
| get_PHDistCorrelation | Man page Source code |
| get_PHDistSubtreeCorrelation | Man page Source code |
| get_PextinctionTime | Man page Source code |
| get_branchNThroughTime | Man page Source code |
| get_hostShifts | Man page Source code |
| get_infectionFrequencies | Man page Source code |
| get_infectionFrequenciesSubtrees | Man page Source code |
| get_infectionStatistics | Man page Source code |
| get_tBirth | Source code |
| is_alive | Source code |
| plot.cophylogeny | Man page Source code |
| print.cophylogeny | Man page Source code |
| prune_cophylo | Man page Source code |
| prune_hostTree | Source code |
| prune_parasiteTree | Source code |
| rcophylo | Man page Source code |
| rcophylo_HP | Man page Source code |
| rcophylo_HresP | Man page Source code |
| rcophylo_PonH | Man page Source code |
| rphylo_H | Man page Source code |
