Man pages for Japrin/STARTRAC
Single T-cell Analysis by Rna-seq and Tcr TRACking
| calCloneLLR | calculate the log likelihood ratio of each clonotype,... |
| calIndex | Calculate cluster level indices |
| calTissueDist | calculate Startrac.dist (tissue distribution preference) |
| example.cloneDat.Zhang2018 | TCR clonotype data extracted from the publication by Zhang et... |
| getSig | Get the p value given one Startrac object and a list of... |
| Gini | Gini of the input vector |
| initialize-methods | initialize method for Startrac |
| initialize-StartracOut-method | initialize method for StartracOut |
| loginfo | dispaly message with time stamp |
| mcol.entropy | entropy of each column of the input matrix |
| mcol.gini_simpson | gini_simpson of each column of the input matrix |
| mrow.entropy | entropy of each row of the input matrix |
| pIndex | Calculate pairwise indices |
| plot | plot the indexes |
| plotTissueDist | plot Startrac.dist (tissue distribution preference) |
| show | show method for Startrac |
| show-StartracOut-method | show method for StartracOut |
| Startrac | The Startrac Class |
| StartracOut | The StartracOUt Class |
| Startrac.run | warpper function for Startrac analysis |
