calIndex: Calculate cluster level indices

In Japrin/STARTRAC: Single T-cell Analysis by Rna-seq and Tcr TRACking

Calculate cluster level indices

Description

Calculate cluster level indices

Usage

Startrac.calIndex(object, cores, n.perm, normEntropy)

## S4 method for signature 'Startrac'
calIndex(object, cores = NULL, n.perm = NULL, normEntropy = FALSE)

Arguments

object	A Startrac object
cores	number of core to be used. Passed to doParallel::registerDoParallel. default: NULL.
n.perm	integer number of permutation will be performed. If NULL, no permutation. (default: NULL)
normEntropy	logical; whether normalize migration and transition index. default: FALSE.

Value

an object of class Startrac

Japrin/STARTRAC documentation built on Dec. 4, 2023, 1:35 a.m.