StartracOut: The StartracOUt Class

In Japrin/STARTRAC: Single T-cell Analysis by Rna-seq and Tcr TRACking

The StartracOUt Class

Description

Object store the result of Startrac.run:

Slots

proj

character. identification of the object. For example, patient id. default: "AID"

cluster.data

data.frame. Each line for a cluster; contain the cluster level indexes information

pIndex.migr

data.frame. Each line for a cluster; pairwise migration index between the two locations indicated in the column name.

pIndex.tran

data.frame. Each line for a cluster; pairwise transition index betwwen the two major clusters indicated by the row name and column name.

cluster.sig.data

data.frame. Each line for a cluster; contains the p values of cluster indices.

pIndex.sig.migr

data.frame. Each line for a cluster; contains the p values of pairwise migration indices.

pIndex.sig.tran

data.frame. Each line for a cluster; contains the p values of pairwise transition indices.

objects

list. other objects

Japrin/STARTRAC documentation built on Dec. 4, 2023, 1:35 a.m.