annotation.merge: Annotation function (mulitple name)

In JhuangLab/annovarR: Integrated Framework to Annotate Genetic Variants

Description

Annotation function (mulitple name)

Usage

annotation.merge(anno.names, ...)

Arguments

anno.names	Annotation names, eg. c('avsnp138', 'avsnp147', '1000g2015aug_all')
...	Other parameters see annotation

Examples

library(data.table)
chr <- c('chr1', 'chr2', 'chr1')
start <- c('10020', '10020', '10020')
end <- c('10020', '10020', '10020')
ref <- c('A', 'A', 'A')
alt <- c('-', '-', '-')
database <- system.file('extdata', 'demo/hg19_avsnp147.txt', package = 'anor')
database.dir <- dirname(database)
dat <- data.table(chr = chr, start = start, end = end, ref = ref, alt = alt)
x <- annotation.merge(dat = dat, anno.names = c('avsnp147'), 
database.dir = database.dir, db.type = 'txt')

JhuangLab/annovarR documentation built on April 23, 2020, 10:51 p.m.