sqlite2sql: Function to dump sqlite database (Now only use system version...

In JhuangLab/annovarR: Integrated Framework to Annotate Genetic Variants

Description

Function to dump sqlite database (Now only use system version sqlite)

Usage

sqlite2sql(
  sqlite_bin = c(Sys.which("sqlite"), Sys.which("sqlite3")),
  dbname = "",
  out.sql = "",
  cmd = "{sqlite_bin} {dbname} '.dump' | gzip > {out.sql}",
  debug = FALSE,
  ...
)

Arguments

sqlite_bin	Sqlite executable file
dbname	Sqlite database path
out.sql	Output SQL (gzip format)
cmd	The command be used to dump
debug	If set TRUE, only print the command
...	Other parameters pass to system

Examples

sqlite2sql('sqlite3', 'default.sqlite', debug = TRUE)

JhuangLab/annovarR documentation built on April 23, 2020, 10:51 p.m.