defRootCells: definition of root cells

In JhuangLab/flowSpy: A Toolkit for Flow And Mass Cytometry Data

Description

definition of root cells

Usage

defRootCells(object, root.cells = NULL, verbose = FALSE)

Arguments

object	an FSPY object
root.cells	vector. Cell name of the root cells
verbose	logical. Whether to print calculation progress.

Value

An FSPY object

Examples

if (FALSE) {
# Define root cells by cluster
fspy <- defRootCells(fspy, root.cells = 6, verbose = TRUE)
fspy <- defRootCells(fspy, root.cells = c(6,8), verbose = TRUE)

# Define root cells by cell names
cells <- test.meta.data$cell[which(test.meta.data$stage == "D0")]
cells <- as.character(cells)
fspy <- defRootCells(fspy, root.cells = cells, verbose = TRUE)
}

JhuangLab/flowSpy documentation built on July 15, 2020, 8:31 a.m.