plotPseudotimeDensity: plot Pseudotime density of FSPY

In JhuangLab/flowSpy: A Toolkit for Flow And Mass Cytometry Data

Description

plot Pseudotime density of FSPY

Usage

plotPseudotimeDensity(
  object,
  color.by = "stage",
  main = "Density of pseudotime",
  adjust = 0.5,
  plot.theme = theme_bw()
)

Arguments

object	an FSPY object
color.by	character.
main	character. Title of the plot
adjust	numeric. A multiplicate bandwidth adjustment.
plot.theme	themes from ggplot2

Value

ggplot2 figure

Examples

if (FALSE) {

plotPseudotimeDensity(fspy)

plotPseudotimeDensity(fspy, adjust = 1)
plotPseudotimeDensity(fspy, adjust = 2)

plotPseudotimeDensity(fspy, adjust = 2) +
  scale_color_manual(values = c("#00599F","#FF3222","#009900",
                                "#FF9933","#FF99FF","#7A06A0"))

}

JhuangLab/flowSpy documentation built on July 15, 2020, 8:31 a.m.