plotPieTree: plot MST pie of FSPY
In JhuangLab/flowSpy: A Toolkit for Flow And Mass Cytometry Data

Description Usage Arguments Value Examples

plot MST pie of FSPY

plotPieTree(
  object,
  cex.size = 2,
  size.by.cell.number = TRUE,
  as.tree = FALSE,
  root.id = NULL,
  show.node.name = FALSE
)

`object`	an FSPY object
`cex.size`	numeric. size cex of the dot
`size.by.cell.number`	logical. Whether to size node by cell number
`as.tree`	logical. Whether to show node as tree
`root.id`	numeric. Root id of the tree, if as.tree is TRUE
`show.node.name`	logical. whether to show node name

ggplot2 figure

if (FALSE) {

# Runs only have two or more stages
plotPieTree(fspy, cex.size = 1, size.by.cell.number = T) +
   scale_fill_manual(values = c("#00599F","#FF3222","#009900",
                                "#FF9933","#FF99FF","#7A06A0"))
}