Man pages for Jialab-UCR/Hapi
Inference of Chromosome-length Haplotypes using Genomic Data of Single Gamete Cells
| base2num | Convert genotype coded in A/T/C/G to 0/1 |
| crossover | Crossover information across all gamete cells |
| gamete11 | Haplotypes of a single gamete cell for visualization |
| gmt | Raw genotyping data |
| hapiAssemble | Consensus haplotype assembly |
| hapiAssembleEnd | Assembly of haplotypes in regions at the end of a chromosome |
| hapiAutoPhase | Automatic inference of haplotypes |
| hapiBlockMPR | Maximum Parsimony of Recombination (MPR) for proofreading of... |
| hapiCVCluster | Filter out hetSNPs in potential complex regions |
| hapiCVDistance | Histogram of crossover distance |
| hapiCVMap | Visualization of crossover map |
| hapiCVResolution | Histogram of crossover resolution |
| hapiFilterError | Filter out hetSNPs with potential genotyping errors |
| hapiFrameSelection | Selection of hetSNPs to form a framework |
| hapiGameteView | Visualization of haplotypes in a single gamete cell |
| hapiIdentifyCV | Indentify crossovers in gamete cells |
| hapiImupte | Imputation of missing genotypes in the framework |
| Hapi-package | Hapi is a novel easy-to-use package that only requires 3 to 5... |
| hapiPhase | Phase draft haplotypes by majority voting |
| hg19 | Chromosome information of hg19 |
| num2base | Convert genotype coded in 0/1 to A/T/C/G |
