hapiCVMap: Visualization of crossover map

Description Usage Arguments Value Author(s) Examples

Description

Visualization of crossover map

Usage

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hapiCVMap(cv, chr = hg19, step = 5, gap = gap.hg19, x.limits = 6,
  y.breaks = NULL, y.labels = NULL)

Arguments

cv

a dataframe of crossover information

chr

a dataframe of chromosome information, including length, and centrometric regions

step

a numeric value of genomic interval in Mb. Default is 5

gap

a dataframe of unassembled regions with the first column is chromosme, the second column is start position, and third column is the end position of the gap. Default is gap for hg19. If no gap region is provided, use gap=NULL

x.limits

a numeric value of limits on x axis

y.breaks

a vector of positions to show labels on y axis. Default is NULL

y.labels

a vector of labels on the y axis. Default is NULL

Value

a plot of crossover map on all the chromosomes

Author(s)

Ruidong Li

Examples

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data(crossover)
## Not run: hapiCVMap(cv=crossover)

Jialab-UCR/Hapi documentation built on May 30, 2019, 11:41 a.m.