NetORA_Pre: Building sub-network in background
In JiantaoShi/NetORA: Network-based pathway over-representation analysis (NetORA)

Description Usage Arguments Value Author(s) References Examples

This function implements a preprocessing step that find all neighbor of a given pathway.

1	NetORA_Pre(SR, netMatrix, progressBar = TRUE)

`SR`	a vector of pathway
`netMatrix`	a integer matrix which is accepted by NetGPA as a network

a data frame

Jiantao Shi

Jiantao Shi: NetORA, a package for network-based pathway over-representation analysis.

library("NetORA")
data(text_2006_12_NetGPA)
data(Example_NetGPA)
ExE_Hyper  <- Example_NetGPA$ExE_Hyper
queryTable <- NetORA_Pre(ExE_Hyper, text_2006_12_NetGPA, progressBar = TRUE)
Cancer_GS  <- Example_NetGPA$Cancer_GeneSet
PG <- colnames(text_2006_12_NetGPA)
mergedT <- NetORA_GS(Cancer_GS, queryTable, PG, FDR = 0.05)