NetORA_pHyper: The Hypergeometric Distribution in NetORA
In JiantaoShi/NetORA: Network-based pathway over-representation analysis (NetORA)

Description Usage Arguments Value Author(s) References Examples

This function implements a test based on Hypergeometric Distribution

1	NetORA_pHyper(SG, SR, PG)

`SG`	a vector of signature
`SR`	a vector of pathway
`PG`	a vector of background genes

a list

Jiantao Shi

Jiantao Shi: NetORA, a package for network-based pathway over-representation analysis.

library("NetORA")
data(text_2006_12_NetGPA)
data(Example_NetGPA)
ExE_Hyper  <- Example_NetGPA$ExE_Hyper
queryTable <- NetORA_Pre(ExE_Hyper, text_2006_12_NetGPA, progressBar = TRUE)
Cancer_GS  <- Example_NetGPA$Cancer_GeneSet
PG <- colnames(text_2006_12_NetGPA)
mergedT <- NetORA_GS(Cancer_GS, queryTable, PG, FDR = 0.05)