NetORA_MSigDB_CP: Network-based enrichment for a list of signatures
In JiantaoShi/NetORA: Network-based pathway over-representation analysis (NetORA)

Description Usage Arguments Value Author(s) References Examples

This function is wraper of core function NetORA to work on a list of gene sets

1	NetORA_MSigDB_CP(SG, MSigDB_NetORA_GS, PG)

`SG`	a vector of gene signature
`MSigDB_NetORA_GS`	pre-computed neighbors of Canonical pathways as defined in MSigDB
`PG`	a vector of background genes

a list

Jiantao Shi

Jiantao Shi: NetORA, a package for network-based pathway over-representation analysis.

library("NetORA")
data(text_2006_12_NetGPA)
data(Example_NetGPA)
data(MSigDB_NetORA_GS)
ExE_Hyper  <- Example_NetGPA$ExE_Hyper
PG <- colnames(text_2006_12_NetGPA)
CancerPathway <- paste0("REACTOME_", Example_NetGPA$CancerPathway)
mergedT <- NetORA_MSigDB_CP(ExE_Hyper, MSigDB_NetORA_GS[CancerPathway], PG)