API for JinmiaoChenLab/cytofkit2
cytofkit2: an integrated mass cytometry data analysis pipeline. Cytofkit provides functions for data pre-processing, fast clustering, data visualization through linear or non-linear dimensionality reduction, automatic identification of cell subsets, and inference of the relatedness between cell subsets
| Global functions | |
|---|---|
| ClusterX | Man page Source code |
| DensVM | Man page Source code |
| FlowSOM_integrate2cytofkit | Source code |
| Rphenograph | Man page Source code |
| applyComp | Source code |
| assign_pop | Source code |
| autoLgcl | Source code |
| clusterAssign | Source code |
| cytofAsinh | Source code |
| cytof_addToFCS | Man page |
| cytof_cluster | Man page Source code |
| cytof_clusterMtrx | Man page Source code |
| cytof_clusterPlot | Man page Source code |
| cytof_clusterStat | Man page Source code |
| cytof_colorPlot | Man page Source code |
| cytof_dimReduction | Man page Source code |
| cytof_exprsExtract | Man page Source code |
| cytof_exprsMerge | Man page Source code |
| cytof_heatmap | Man page Source code |
| cytof_progression | Man page Source code |
| cytof_progressionPlot | Man page Source code |
| cytof_writeResults | Man page Source code |
| cytofkit | Man page Source code |
| cytofkit2-package | Man page |
| cytofkitNews | Man page Source code |
| cytofkitShinyAPP | Man page Source code |
| cytofkit_shiny_dashboard | Man page Source code |
| densityIMG | Source code |
| detect_anoms_sd | Source code |
| estimateDc | Source code |
| find_neighbors | Source code |
| haloDetect | Source code |
| jaccard_coeff | Source code |
| kernalDensity | Source code |
| localDensity | Source code |
| minDistToHigher | Source code |
| peakDetect | Source code |
| peakFind | Source code |
| scaleData | Source code |
| spectral1 | Man page Source code |
| spectral2 | Man page Source code |
| splitFactorGenerator | Source code |
